Publications

SIMBA Policy Brief – Soil, marine and food microbiomes for the achievement of the One Health Goals

Annika Francesca Tensi, Frederic Ang, Stimulating risk averse farmers to adopt microbial applications, Q Open, Volume 3, Issue 1, 2023, qoad011, https://doi.org/10.1093/qopen/qoad011

Hassa J, Tubbesing TJ, Maus I, Heyer R, Benndorf D, Effenberger M, Henke C, Osterholz B, Beckstette M, Pühler A, et al. Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms. 2023; 11(10):2412. https://doi.org/10.3390/microorganisms11102412

Marmiroli, M., Caldara, M., Pantalone, S., Malcevschi, A., Maestri, E., Keller, A.A. and Marmiroli, N., 2022. Building a risk matrix for the safety assessment of wood derived biochars. Science of the Total Environment, 839, p.156265. https://doi.org/10.1016/j.scitotenv.2022.156265

Pagano, L., Rossi, R., White, J.C., Marmiroli, N. and Marmiroli, M., 2023. Nanomaterials biotransformation: In planta mechanisms of action. Environmental Pollution, 318, p.120834. https://doi.org/10.1016/j.envpol.2022.120834

Riboni, N., Bianchi, F., Mattarozzi, M., Caldara, M., Gullì, M., Graziano, S., Maestri, E., Marmiroli, N. and Careri, M., 2023. Ultra-high Performance Liquid Chromatography–Ion Mobility–High-Resolution Mass Spectrometry to Evaluate the Metabolomic Response of Durum Wheat to Sustainable Treatments. Journal of Agricultural and Food Chemistry. https://pubs.acs.org/doi/10.1021/acs.jafc.3c04532

Hett, J., Döring, T.F., Bevivino, A. and Neuhoff, D., 2023. Impact of microbial consortia on organic maize in a temperate climate varies with environment but not with fertilization. European Journal of Agronomy, 144, p.126743. https://doi.org/10.1016/j.eja.2023.126743

Slijper, T., Tensi, A.F., Ang, F., Ali, B.M. and van der Fels-Klerx, H.J., 2023. Investigating the relationship between knowledge and the adoption of sustainable agricultural practices: The case of Dutch arable farmers. Journal of Cleaner Production, p.138011. https://doi.org/10.1016/j.jclepro.2023.138011

Nelkner, J., Huang, L., Lin, T.W. et al. Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. Environmental Microbiome 18, 26 (2023). https://doi.org/10.1186/s40793-023-00479-9

Maus I, Wibberg D, Belmann P, Hahnke S, Huang L, Spröer C, Bunk B, Blom J, Sczyrba A, Pühler A, Klocke M and Schlüter A (2022) The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9^T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses. Front. Microbiol. 13:1032515. doi: 10.3389/fmicb.2022.1032515

Pavlicevic, M.; Abdelraheem, W.; Zuverza-Mena, N.; O’Keefe, T.; Mukhtar, S.; Ridge, G.; Ranciato, J.; Haynes, C.; Elmer, W.; Pignatello, J.; et al. Engineered Nanoparticles, Natural Nanoclay and Biochar, as Carriers of Plant-Growth Promoting Bacteria. Nanomaterials 2022, 12, 4474. https://doi.org/10.3390/nano12244474

Graziano S, Caldara M, Gullì M, Bevivino A, Maestri E, Marmiroli N. A Metagenomic and Gene Expression Analysis in Wheat (T. durum) and Maize (Z. mays) Biofertilized with PGPM and Biochar. International Journal of Molecular Sciences. 2022; 23(18):10376. https://doi.org/10.3390/ijms231810376

Tensi, A.F.; Ang F.; van der Fels-Klerx, H.J. Behavioural drivers and barriers for adopting microbial applications in arable farms: Evidence from the Netherlands and Germany, Technological Forecasting and Social Change 2022, Volume 182, 121825, https://doi.org/10.1016/j.techfore.2022.121825.

Magarelli, R.A.; Trupo, M.; Ambrico, A.; Larocca, V.; Martino, M.; Palazzo, S.; Balducchi, R.; Joutsjoki, V.; Pihlanto, A.; Bevivino, A. Designing a Waste-Based Culture Medium for the Production of Plant Growth Promoting Microorganisms Based on Cladodes Juice from Opuntia ficus-indica Pruning. Fermentation 2022, 8, 225. https://doi.org/10.3390/fermentation8050225

Hett J, Neuhoff D, Döring TF, Masoero G, Ercole E, Bevivino A. Effects of Multi-Species Microbial Inoculants on Early Wheat Growth and Litterbag Microbial Activity. Agronomy. 2022; 12(4):899. https://doi.org/10.3390/agronomy12040899

Hassa J, Klang J, Benndorf D, Pohl M, Hülsemann B, Mächtig T, Effenberger M, Pühler A, Schlüter A, Theuerl S. Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants. Microorganisms. 2021; 9(7):1457. https://doi.org/10.3390/microorganisms9071457

Yang, N., Nesme, J., Røder, H.L. et al. Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis. npj Biofilms Microbiomes 7, 82 (2021). https://doi.org/10.1038/s41522-021-00253-0

Ali BM, Ang F, van der Fels-Klerx HJ (2021) Consumer willingness to pay for plant-based foods produced using microbial applications to replace synthetic chemical inputs. PLoS ONE 16(12): e0260488. https://doi.org/10.1371/journal.pone.0260488

Pavlicevic, M., Marmiroli, N. and Maestri, E., 2022. Immunomodulatory peptides—A promising source for novel functional food production and drug discovery. Peptides, 148, p.170696.

Tabacchioni S, Passato S, Ambrosino P, Huang L, Caldara M, Cantale C, Hett J, Del Fiore A, Fiore A, Schlüter A, Sczyrba A, Maestri E, Marmiroli N, Neuhoff D, Nesme J, Sørensen SJ, Aprea G, Nobili C, Presenti O, Giovannetti G, Giovannetti C, Pihlanto A, Brunori A, Bevivino A. Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture. Microorganisms. 2021; 9(2):426. https://doi.org/10.3390/microorganisms9020426 

Maus, I.; Tubbesing, T.; Wibberg, D.; Heyer, R.; Hassa, J.; Tomazetto, G.; Huang, L.; Bunk, B.; Spröer, C.; Benndorf, D.; Zverlov, V.; Pühler, A.; Klocke, M.; Sczyrba, A.; Schlüter, A. The Role of Petrimonas mucosa ING2-E5A^T in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses. Microorganisms 2020, 8, 2024. https://doi.org/10.3390/microorganisms8122024

Maus, I., Klocke, M., Derenkó, J., Stolze, Y., Beckstette, M., Jost, C., Wibberg, D., Blom, J., Henke, C., Willenbücher, K., Rumming, M., Rademacher, A., Pühler, A., Sczyrba, A., Schlüter, A. (2020) Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome, 15(7); https://doi.org/10.1186/s40793-020-00354-x 

Hassa, J., Wibberg, D., Maus, I., Pühler, A. and Schlüter, A., 2020. Genome analyses and genome-centered Metatranscriptomics of Methanothermobacter wolfeii strain SIV6, isolated from a thermophilic production-scale biogas fermenter. Microorganisms, 8(1), p.13.

Coppola, M., Diretto, G. Digilio, M.C., Woo, S.L., Giuliano, G., Molisso, D., Pennacchio, F., Lorito, M., Rao, R. (2019) Transcriptome and Matabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids. Frontiers in Physiology, 10: 745; https://doi.org/10.3389/fphys.2019.00745

Latini, A., Bacci, G., Teodoro, M., Mirabile Gattia, D, Bevivino, A., Trakal, L. (2019) The Impact of Soil-Applied Biochars from Different Vegetal Feedstocks on Durum Wheat Plant Performance and Rhizospheric Bacterial Microbiota in Low Metal-Contaminated Soil. Frontiers in Microbiology 10: 2694; https://doi.org/10.3389/fmicb.2019.02694

Nelkner, J., Henke, C., Lin,T.W., Pätzold, W., Hassa, J., Jaenicke, S., Grosch, R., Pühler, A., Sczyrba, A., Schlüter, A. (2019) Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Genes 10(6): 424; https://doi.org/10.3390/genes10060424

Nelkner, J., Torres Tejerizo, G., Hassa, J., Lin, T.W., Witte, J., Verwaaijen, B., Winkler, A., Bunk, B., Spröer, C., Overmann, J., Grosch, R., Pühler, A., Schlüter, A (2019) Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics. Genes 10(8): 601; https://doi.org/10.3390/genes10080601